FINAL PROGRAMME
SMRT SCIENTIFIC SYMPOSIUM - 2 & 3 MAY 2017
TUESDAY, MAY 2
WEDNESDAY, MAY 3
08:15 - 08:45
Welcome & Registration
08:45 - 09:00
Opening Remarks
08:30 - 09:00
Welcome & Registration
KEYNOTE
09:00 - 10:00
Capturing the entire clinically actionable genome with high-throughput long-read DNA sequencing technologies for comprehensive diagnostic test
ERIC SCHADT
- Icahn School of Medicine, USA
KEYNOTE
09:00 - 10:00
SMRT sequencing for understanding centromeres, meta-methylome, and meta-mobilome
SHINICHI MORISHITA
- University of Tokyo, JAPAN
10:00 - 10:20
Coffee Break
10:00 - 10:20
Coffee Break
LECTURE
10:20 - 10:50
From one to many - Understanding structural variation using multiple genome references
FELIX BEMM
- MPI Tübingen, GERMANY
LECTURE
10:20 - 10:50
Discovery of long templated insertions in immunoglobulin genes by ARTISAN PCR and SMRT sequencing
MARVYN KONING
- LUMC, NETHERLANDS
LECTURE
10:50 - 11:20
Y chromosome dynamics in Drosophila
AMANDA LARRACUENTE
- Univ. of Rochester, USA
LECTURE
10:50 - 11:20
SMRT sequencing of the MHC and other immune genes
JULIE KARL
- Univ. Wisconsin-Madison, USA
LECTURE
11:20 - 11:50
Locally reduced recombination in an asexual springtail
KEN KRAAIJEVELD
- VU Amsterdam, NETHERLANDS
LECTURE
11:20 - 11:50
Targeted enrichment without amplification and SMRT sequencing of repeat-expansion disease causative genomic regions
TYSON CLARK
- PacBio, USA
LECTURE
11:50 - 12:20
Organization and synteny of hemoglobin gene cluster in codfishes: our experience with targeted sequence capture
AVE TOOMING-KLUNDERUD
- University of Oslo, NORWAY
LECTURE
11:50 - 12:20
Resolving challenging regions in the human genome
ADAM AMEUR
- Uppsala University, SWEDEN
SPONSOR
12:20 - 12:30
TBA
bionano Genomics
SPONSOR
12:20 - 12:30
TBA
Advanced Analytical Technologies
12:30 - 13:50
Lunch & Networking
12:30 - 13:50
Lunch & Networking
KEYNOTE
13:50 - 14:50
Pathology of structural variations is determined by integrity of topological chromatin domains
STEFAN MUNDLOS
- Max Planck Institute, GERMANY
KEYNOTE
13:50 - 14:50
Of Apes and Humans: Understanding the human-specific pieces of the puzzle through long read sequencing
JASON UNDERWOOD
- University of Washington, USA
14:50 - 15:10
Coffee Break
14:50 - 15:10
Coffee Break
LECTURE
15:10 - 15:40
Optical Mapping for whole-genome assembly and characterization of structural variations
MARZIA ROSSATO
- University of Verona, ITALY
LECTURE
15:10 - 15:40
Comparing short and long read methods for transcriptome discovery
RICHARD KUO
- University of Edinburgh, UK
LECTURE
15:40 - 16:10
The genomic architecture of nucleolar organiser regions on the unsequenced short-arms of human acrocentric chromosomes
BRIAN McSTAY
- NUI Galway, IRELAND
LECTURE
15:40 - 16:10
Emerging applications of SMRT Sequencing Technology
LANCE HEPLER
- PacBio, USA
LECTURE
16:10 - 16:40
Applying SMRT sequencing to medically relevant clinical research encompassing human and infectious disease
BOBBY SEBRA
- Icahn School of Medicine, USA
LECTURE
16:10 - 16:40
Proteogenomic analysis of alternative splicing: the search for novel biomarkers for colorectal cancer
GOSIA KOMOR
- NKI, NETHERLANDS
16:40 - 17:00
Coffee Break
16:40 - 17:00
Coffee Break
KEYNOTE
17:00 - 18:00
The impact of long reads in parasite genomics
THOMAS OTTO
- Wellcome Trust Sanger Inst., UK
KEYNOTE
17:00 - 18:00
Tools and technologies to characterize isoform function at proteome-scale
GLORIA SHEYNKMAN
- Dana Farber Cancer Inst., USA
18:30 - 20:00
Conference Drinks & Networking Mixer
SMRT INFORMATICS DEVELOPERS CONFERENCE - 4 MAY 2017
THURSDAY MORNING
THURSDAY AFTERNOON
08:00 - 08:30
Welcome & Registration
08:30 - 08:45
Opening Remarks
12:30 - 13:30
Lunch & Networking
KEYNOTE
08:45 - 09:30
On DeBruijn graphs, consensus, and variation: A new algorithm does it all (rapidly)
GENE MYERS
- Max Planck Institute, GERMANY
SESSION 2
13:30 - 14:40
Analysis of Large Genomes
De novo Assembly, SV Analysis & Epigenetics
LECTURE
09:30 - 10:00
What’s new in SMRT Link and SMRT Analysis Tools
JIM DRAKE
- PacBio, USA
SESSION 2
14:40 - 15:50
Application Area
Analysis Applications for Targeted Sequencing
10:00 - 10:30
Coffee Break
15:50 - 16:20
Coffee Break
SESSION 1
10:30 - 12:30
Lightning Presentations for each Application Area
SESSION 3
16:20 - 17:20
Application Area
RNA Analysis & Clinical Diagnostics
Challenges with Diploid assembly
JASON CHIN
- PacBio, USA
SQANTI analysis of Iso-seq data processing of pipelines
Understanding centromere evolution and CpG methylation during vertebrate speciation
SHINICHI MORISHITA
- University of Tokyo, JAPAN
FRANCISCO PARDO
- CIPF, SPAIN
Transcriptome Annotation Construction Software (TACoS): leveraging long and short read attributes for a fully source aware transcriptome annotation
mRNA processing: misunderstood and under-appreciated!
RICHARD KUO
- University of Edinburgh, UK
YAHYA ANVAR
- LUMC, NETHERLANDS
Structural Variant Detection with pbsv
17:20 - 17:50
Discussion and Closing Remarks
AARON WENGER
- PacBio, USA
Analysis of clinical targets with no need of alignment to a reference
ADAM AMEUR
- Uppsala University, SWEDEN
Juliet - One Click Minor Variant Calling
ARMIN TÖPFER
- PacBio, USA
Highly diversified metamethylome and metamobilome in human gut metagenomes
YOSHIHIKO SUZUKI
- University of Tokyo, JAPAN
MEGAN analysis of long reads from microbiome samples
DANIEL HUSON
- Univ. of Tuebingen, GERMANY
SMRTLEIDEN MAY 2 - 4
Leiden University Medical Center
Buruma Hall, Hippocratespad 21(Building 3), 2333 ZD Leiden, Netherlands
contact us at SMRT-Leiden@lumc.nl, should you require any assistance!
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