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Bio-Informatics Tools / Software
Licensed and locally developed software available at the Leiden Genome Technology Center
Other software recommended by the LGTC
- Sanger Sequencing, view and/or align traces
- Applied Biosystems Sequence Scanner
- Codon Code
- Staden Package
Licensed software available at the LGTC
Program: Rosetta Resolver
Functions: The CMSB-NBIC Rosetta Resolver system is a multi-user system for the storage and analysis of gene expression microarray data
Introduction: Website, Dr. Peter Taschner
Program: MaRe: Microarray Retriever
Functions: This tool enables batch retrieval of microarray data matching your search criteria
Where: Web based
Program: CORE_TF
Functions: Identifying Conserved and Over-Represented Transcription Factors
Where: Web based
Program: Illumina GenomeStudio for Illumina microarrays
Functions: analysis and visualization of microarray and chip data, including data filtering, normalization, hierarchical clustering, k-means clustering, profile search, classification
Where: LGTC PC available in room R5-24
Reservation: agenda (mandatory) in room R5-24
Registration: registration list (mandatory) in room R5-24
No Data storage: do not store data on the LGTC PC, at some point it will be deleted
Login: Ask LGTC to be authorized to access the GenomeStudio PC
Introduction: Handbook, web-guides
Program: Softgenetics Mutation Surveyor
Functions: rapid location of all differences between the wild type sequence and sample traces
Where: LGTC PC available in room R5-24
Reservation: agenda (mandatory) in room R5-24
Registration: registration list (mandatory) in room R5-24
No Data storage: do not store data on the LGTC PC, at some point it will be deleted
Introduction:Web-guides
Program: Applied Biosystems Gene Mapper
Functions: sizing and pattern recognition for any fragment analysis
Where: LGTC PC available in room R5-24
Reservation: agenda (mandatory) in room R5-24
Registration: registration list (mandatory) in room R5-24
No Data storage: do not store data on the LGTC PC, at some point it will be deleted
Login: ask LGTC for ID and password
Introduction: Web-guides
Program: Softgenetics Gene Marker
Functions: sizing and pattern recognition for any fragment analysis
Where: Network license available via the LGTC
Introduction: Web-guides
Program: Illumina GenomeStudio for Illumina Next Gen Sequencing
Functions: Analyze primary sequence-based Genome Analyzer data
Where: LGTC PC available in room R5-24
Reservation: agenda (mandatory) in room R5-24
Registration: registration list (mandatory) in room R5-24
No Data storage: do not store data on the LGTC PC, at some point it will be deleted
Login: Ask LGTC to be authorized to access the GenomeStudio PC
Introduction: Web-guides
Information
Contact the LGTC.
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