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E-miR: miRNA analysis and expression profiling pipeline

Currently, there are two versions of the E-miR pipeline, either implementing the Bowtie or Eland aligner. Please refer to the Readme file for detailed instructions on use.

Eland version pipeline files can be downloaded or click here for the Standalone Demo version.
More info on the Eland aligner can be found here.
Bowtie version pipeline files can be downloaded or click here for the Standalone Demo version.
Info on how to generate the Bowtie genome indexes can be found at the GAPPS pipeline website or at the Bowtie-sourceforge page.

E-miR was created by Henk PJ Buermans and contributed by Matthew S. Hestand, Michiel van Galen, Michel P. Villerius, Ariyurek Y, van Ommen GJ, den Dunnen JT, 't Hoen PA.

Manuscript in preparation.

Contact: h.buermans_at_lumc.nl.