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Heat #3965: Add extra colum with GO info
Ellen Sterrenburg <>
2003-04-23 07:49:51
Hi Chris,

Is it possible to add an extra column to the export table with the Gene
Annotation of the genes you're interested in? I know it is possible to
right-click your mouse and then have several options, also for annotation,
but is this also possible to have this information in a table for several
genes at once?

1) The gene annotation that I would like to export is the gene ontology. The
problem here is that you have 3 main functions:
Biological proces, Molecular function and Cellular component. And a second
problem is that there are different levels of these functions. Ideally I
would like to have all in different columns, but I don't know if that is
To give you an idea, what I do now is, I export the acc.nrs. of the genes I
am interested in (for intance significant in my ANOVA) and I load them into
eGOn. There you can upload a batch of acc.nrs. and get the ontology tree per
function. Here you can export an excel file and then you have a file with
the acc.nrs. with their functions. You understand that if this is possible
in Rosetta it would save a lot of time!

2) Where I would like to export it, is out of the cluster viewer. So that
you have a table with the genes you're interested in, their cluster number,
the ratio data and their function. After that it is easy to make pies per
cluster so that you can see if genes with one (or more) particular functions
fall into one cluster.

Hoi Ellen,

There is a way to add custom columns to the Matrix Viewer and then be able
to export the custom columns along with the cluster number and ratio data.
It will take a little work to describe and perform so I have included a Word
document with screen shots for ease. Let me know if it helps and if I can
close the case. Again this will require Resolver to be at the Version and
Build of


Chris Dagsgaard

Document with screen shots is on: I:Lab-J:Rosetta Heat #3965

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2003-03-03 12:04:44
Heat 3358: export data for several profiles/experiments ...
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2003-03-12 16:47:55
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2003-03-14 14:44:20
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2003-03-28 11:07:43
Re: problems with image view
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2003-03-28 11:46:50
Re: problems with image view
Ellen Sterrenburg
2003-04-03 17:56:18
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2003-04-03 17:54:08
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2003-04-17 07:44:13
Heat #3965: Add extra colum with GO info
Ellen Sterrenburg
2003-04-23 07:49:51
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2004-01-27 12:27:06
Re: Export data in Excel format
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2004-02-11 07:43:51
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2004-02-11 07:53:03
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